PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485809.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 926aa    MW: 105629 Da    PI: 3.9582
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08480499525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     lC+ffa+ G+C +G++C+F H
  XP_004485809.1 480 LCDFFAK-GWCIRGSSCSFLH 499
                     8******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.333475502IPR000571Zinc finger, CCCH-type
SMARTSM003560.0096475501IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.26E-6475499IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-6480499IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MSISDSPVAD DPSLQDDEDD DEEEEEEEEE EIEEEVEEEE EHEEEQEEEE EIEEQQQQQE  60
EEEEEEVEEV EEEEEEEEEE EEEEEEEEVE EEEEEVVEEE EEEVVEEEEE EEEEEEEKEE  120
EVEEVEEEEE VEEVEEEEEE EVDEEKGEEV EEEEVETIEV EEEEEEEEVE EEEVETVEVE  180
EEEEEEEVEE EEAETVEVEE EEEEEEEEEQ EEETIGMEKE EKEEIAMEEE EEKEEEAIKV  240
KEEEEQEEAE AIKIKKEEEQ EAVVEEKEVV PDSLLDADIL NKDLSQHMEF KVKEENMGPV  300
SSVAENPVVM KSSHYMEEND AVFKASVPSH EAITLKKEEF HLKQEISSPP KSSANLISAE  360
DGKNQGLNVD LDNARSPVQR KTFGGGSEPD CNSKASLSDV KDIDSRATKS SSDMGKDVVT  420
GVIQRDNFVE DADGGPNSKK KIMQSEIESI VDVKQTTSRR TRDLSPSADI KDGNKRPAIL  480
CDFFAKGWCI RGSSCSFLHI KDSVNNSDQE AEGDSFTALQ KRELKLEKGV KERLDGLRTN  540
EEEASPSWHP SHEKEKFLMR DSLFPESRSA FNASNNYFTS NHSSYSSRAE GMTANRNQHM  600
YRGFSNALCS QKLLNSEKEY HALKSTFSSE REDLPLVGSS RVPPHSNGYK LKTCSNNWEP  660
SVPFRPSFFI TSMNVSSPGD LYDPLRDSIE IPNIGDGSLK ASLLIRGSSI QASSQARTCD  720
DSAAVGKHMS DLNDDKSSVS SHNKFYENEP NRSSVPRGKD CLSTKTEITS GTCSNYQNGY  780
VDVGQHTFSV EDTMETEKKR TEHDARHHGE GSGHKKRRVS KDNKIYEMDV DFQTDGSVQK  840
ETKAVKIFRA ALVDLVKELL KPFWHEGRLS KDAHIVIVKK SVDKVVSTLE AHQIPTTEDT  900
AKQYVSSCRS KIAKLVNGYV SKYGKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1797817KKRTEHDARHHGEGSGHKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485809.10.0PREDICTED: pinin isoform X2
TrEMBLA0A072VEF80.0A0A072VEF8_MEDTR; Uncharacterized protein
TrEMBLG7ISE10.0G7ISE1_MEDTR; Uncharacterized protein
STRINGGLYMA15G08331.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-32C3H family protein